In this section

Statistics on protein trees

The protein tree pipeline is described at the following page.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Gene QC Validated genes Short genes Long genes Split genes
----
Plasmodium cynomolgi strain B
----
Plasmodium fragile
----
Plasmodium gonderi
----
-
Plasmodium inui San Antonio 1
-------
Plasmodium knowlesi strain H
-------
Plasmodium malariae Pmal
-------
Plasmodium ovale curtisi Poc2
-------
Plasmodium falciparum 3D7
-------
Plasmodium gaboni
----
-
Plasmodium reichenowi ASM160185v1
----
----
Plasmodium sp. DRC-Itaito PGABG02
----------
Plasmodium sp. gorilla clade G2
----------
Plasmodium berghei ANKA
-------
-
Plasmodium chabaudi chabaudi strain AS
----------
Plasmodium vinckei petteri
----------
Plasmodium yoelii yoelii
--------
----
-
Plasmodium gallinaceum
-------------
Plasmodium relictum
--------------
Plasmodium coatneyi
----------
Babesia bigemina
----------
-
Babesia bovis T2Bo
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Babesia ovata
-------
----
Babesia sp. Xinjiang
----------
Theileria equi strain WA
-------
-
Theileria orientalis strain Shintoku
-------
Theileria parva
-------
Eimeria acervulina
----
----
Eimeria brunetti
----------
-
Eimeria maxima
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Eimeria mitis strain Houghton
----------
----
Eimeria praecox
----------------
Eimeria tenella
-----------------
Cyclospora cayetanensis
-------------
-
Toxoplasma gondii ME49
----------------
Toxoplasma gondii VEG
----------
-
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Besnoitia besnoiti
--------------------
Cystoisospora suis
--------------------
Hammondia hammondi
----------------
Cryptosporidium andersoni
----
----
-------
Cryptosporidium meleagridis
-----------------
-
Cryptosporidium muris RN66
-------------
Cryptosporidium parvum Iowa II
-------------
Cryptosporidium ubiquitum
----------------------
Gregarina niphandrodes
----------
-
Ichthyophthirius multifiliis
----------
----
Tetrahymena thermophila SB210
----------
--------
Paramecium tetraurelia
--------------------
Pseudocohnilembus persalinus
-----------
--------
-
Oxytricha trifallax Oxytricha_MIC_v2.0
-------------
Stylonychia lemnae
----------------------
Stentor coeruleus
---------------------------
Perkinsus marinus ATCC 50983
---------------------------
Symbiodinium microadriaticum
-------
-
Phytophthora nicotianae ASM148298v1
----------
Phytophthora nicotianae P1569
-----------
Phytophthora cactorum
-----------
Phytophthora infestans T30-4
-------
-----
Phytophthora kernoviae 00238/432
--------------
Phytophthora lateralis MPF4
--------------
Phytophthora megakarya
--------------
Phytophthora palmivora
-------
--------
Phytophthora ramorum
-----------------
Phytophthora sojae strain P6497
------------------
Hyaloperonospora arabidopsidis Emoy2
----
---------------
Nothophytophthora sp. Chile5
---------------------
Peronospora effusa Peff_R14
---------------------
Plasmopara halstedii
-------------
-
Aphanomyces astaci strain APO3
----------
-------
Aphanomyces invadans strain NJM9701
-----------------
-
-
Saprolegnia diclina VS20
-------------------
Saprolegnia parasitica CBS 223.65
--------------------
Achlya hypogyna
--------------------
Thraustotheca clavata
----------------
Globisporangium irregulare DAOM BR486
----------------
-
Globisporangium iwayamae DAOM BR242034
-------------------
Globisporangium ultimum DAOM BR144
-----------------
-
-
Pythium aphanidermatum DAOM BR444
-----------
-------
Pythium arrhenomanes ATCC 12531
-----------------
Phytopythium vexans DAOM BR484
-------------
-
Fragilariopsis cylindrus CCMP1102
-------------
----
Pseudo-nitzschia multistriata
-------------
--------
Phaeodactylum tricornutum CCAP 1055/1
--------------------
-
Thalassiosira oceanica
----------
----
Thalassiosira pseudonana CCMP1335
-------------------------
Aureococcus anophagefferens
-------------------------
Ectocarpus siliculosus
-------------------------
Nannochloropsis gaditana CCMP526
----------------------
-
Blastocystis hominis
----------
Hondaea fermentalgiana
----------
Bigelowiella natans CCMP2755
---------------------------
-
Plasmodiophora brassicae
-------
Reticulomyxa filosa
-------
-
Leishmania donovani
-------
----
Leishmania infantum
-------
--------
Leishmania major strain Friedlin
-------
------------
Leishmania panamensis
------------------
-
Leptomonas pyrrhocoris
----------
Leptomonas seymouri
-
-------
-
Trypanosoma conorhini
-------------
Trypanosoma theileri
-------
---------
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Trypanosoma cruzi marinkellei
-----------------
Trypanosoma equiperdum
-----------------
Trypanosoma rangeli SC58
-------
----------------
-
Angomonas deanei
----------------
Strigomonas culicis
----
-------------------
-
Phytomonas sp. EM1
-------------
Phytomonas sp. Hart1
------------------------------
Perkinsela sp. CCAP 1560/4
-------------------------------
Naegleria gruberi
-------
-
Dictyostelium discoideum AX4
-------
----
Dictyostelium purpureum
-------
--------
Tieghemostelium lacteum
------------------
Cavenderia fasciculata
----------
Entamoeba dispar SAW760
-------
---------
-
Entamoeba histolytica HM-1:IMSS
-------------
Entamoeba invadens IP1
------------
-------
Entamoeba nuttalli P19
----------------------
Planoprotostelium fungivorum
-----------------------
Acanthamoeba castellanii str. Neff
-------
-
Giardia duodenalis strain WB C6
-------
----
Spironucleus salmonicida strain ATCC 50377
--------------------
--------
Kipferlia bialata
---------------
Tritrichomonas foetus
-------
-
Monosiga brevicollis MX1
----------
Salpingoeca rosetta
------------------------
-----
Capsaspora owczarzaki ATCC 30864
-----------
Fonticula alba
-----------
Sphaeroforma arctica JP610
-------
-
Chroomonas mesostigmatica CCMP1168
------------------------
----
Guillardia theta CCMP2712
-----------
Cryptomonas paramecium
--------------------------------
Emiliania huxleyi CCMP1516
--------------------------------
Thecamonas trahens ATCC 50062